SubtiBank SubtiBank
yhjB [2018-04-03 09:46:33]
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yhjB [2018-04-03 09:46:33]

similar to metabolite permease
locus
BSU10450
pI
9.63
mw
52.60 kDa
protein length
489 aa Sequence Blast
gene length
1467 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.1|Amino acid transporters] → [category|SW 1.2.4.1.7|Sodium-solute symporter]
  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.12|Other transporters]

    • Gene

    Coordinates
    1,119,162 → 1,120,631

    The protein

    Paralogous protein(s)

  • [protein|7E86EB6FF86F2C4AE3FD11DB8CE8E71696D94B1B|YodF]

    • Expression and Regulation

    Operons

    genes
    [gene|F093B021240236AA938C6336AA0B8DC37839F569|yhjC]-[gene|EFA18ACD034D48868CD97470F81F23976DA300DF|yhjB]
    description
    [Pubmed|22383849]

    regulatory mechanism

  • [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY]: repression, [pubmed|12618455] [pubmed|18083814], in [regulon|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|CodY regulon]
  • [protein|08CFA2C72931A75532D4289BC1D18A826DE9F9CA|ComK]: activation, in [regulon|08CFA2C72931A75532D4289BC1D18A826DE9F9CA|ComK regulon]

    • regulation

  • repressed during growth in the presence of branched chain amino acids ([protein|search|CodY]) [Pubmed|12618455]
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    Biological materials

    Mutant

  • GP2395 (tet) available in [SW|Jörg Stülke]'s lab
  • MGNA-B283 (yhjB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1282 NBRP B. subtilis, Japan]
  • BKE10450 (Δ[gene|EFA18ACD034D48868CD97470F81F23976DA300DF|yhjB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE10450 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATTCATTCTGCTTCCTCCTT, downstream forward: _UP4_TAAGCATAAAAAAAGCAATC
  • BKK10450 (Δ[gene|EFA18ACD034D48868CD97470F81F23976DA300DF|yhjB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK10450 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATTCATTCTGCTTCCTCCTT, downstream forward: _UP4_TAAGCATAAAAAAAGCAATC

    • References

  • 11948146,22383849